TY - BOOK AU - Farfour,Eric AU - Pascreau,Tiffany AU - Zia-Chahabi,Sara AU - Jolly,Emilie AU - Ferrière,Patrice AU - Mazaux,Laurence AU - Vasse,Marc TI - Comparison of two SARS-CoV-2 RT-PCR assays and the implication of the instrument software on the cycle threshold (Ct) value PY - 2022///. N1 - 47 N2 - The Cycle Threshold (Ct) value of SARS-CoV-2 RT-PCRs is used as an indicator of viral load. Using a collection of 45 fresh nasopharyngeal samples collected on universal transport media, we compare the Ct value obtained with 2 RT-PCR assays, the Alinity M SARS-CoV-2, and the Alinity M RESP-4-Plex (Abbott Molecular, Des Plaines, Illinois, United States) processed on an Alinity M device. The assays are highly correlated; however, the Ct values were a median of 4.54 lower with the Alinity M RESP-4-Plex. This difference could be attributed to earlier detection of positivity by the Alinity M software rather than a difference in RT-PCR performances. The Ct-value of SARS-CoV-2 RT-PCRs should be interpreted with caution, taking into account the clinical context and pre-analytical and analytical findings UR - https://shs.cairn.info/journal-annales-de-biologie-clinique-2022-6-page-537?lang=en ER -